jNMFMA: a joint non-negative matrix factorization meta-analysis of transcriptomics data

Inferential, robust non-negative matrix factorization analysis of microarray data

MOTIVATION Modern methods such as microarrays, proteomics and metabolomics often produce datasets where there are many more predictor variables than observations. Research in these areas is often exploratory; even so, there is interest in statistical methods that accurately point to effects that are likely to replicate. Correlations among predictors are used to improve the statistical analysis....

Non-negative matrix factorization

Non-negative Matrix Factorization via Archetypal Analysis

Given a collection of data points, non-negative matrix factorization (NMF) suggests to express them as convex combinations of a small set of ‘archetypes’ with non-negative entries. This decomposition is unique only if the true archetypes are non-negative and sufficiently sparse (or the weights are sufficiently sparse), a regime that is captured by the separability condition and its generalizati...

A new approach for building recommender system using non negative matrix factorization method

Nonnegative Matrix Factorization is a new approach to reduce data dimensions. In this method, by applying the nonnegativity of the matrix data, the matrix is ​​decomposed into components that are more interrelated and divide the data into sections where the data in these sections have a specific relationship. In this paper, we use the nonnegative matrix factorization to decompose the user ratin...

Bayesian Non-negative Matrix Factorization

We present a Bayesian treatment of non-negative matrix factorization (NMF), based on a normal likelihood and exponential priors, and derive an efficient Gibbs sampler to approximate the posterior density of the NMF factors. On a chemical brain imaging data set, we show that this improves interpretability by providing uncertainty estimates. We discuss how the Gibbs sampler can be used for model ...